Protein Info for SMc03814 in Sinorhizobium meliloti 1021

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 335 transmembrane" amino acids 32 to 51 (20 residues), see Phobius details amino acids 61 to 80 (20 residues), see Phobius details amino acids 86 to 103 (18 residues), see Phobius details amino acids 110 to 133 (24 residues), see Phobius details amino acids 139 to 157 (19 residues), see Phobius details amino acids 177 to 201 (25 residues), see Phobius details amino acids 235 to 256 (22 residues), see Phobius details amino acids 268 to 296 (29 residues), see Phobius details amino acids 308 to 327 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 58 to 324 (267 residues), 121.7 bits, see alignment E=1.6e-39

Best Hits

Swiss-Prot: 37% identical to RBSC_BACSU: Ribose import permease protein RbsC (rbsC) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 100% identity to smk:Sinme_3193)

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92L84 at UniProt or InterPro

Protein Sequence (335 amino acids)

>SMc03814 ABC transporter permease (Sinorhizobium meliloti 1021)
MSAPEEVPHMDVDLLKGSDRPLWSRVFLAQETWIALAILVIGLVVSVISAKFATSGNLLN
IFQNACFIGIMALGMTPVLISGGIDISVGSILGMCGVTLGIVLNSDMPLAVGILATLAMG
VACGMVNGIIISYVKLPPFIVTLATLSIGRSLALVLTNNEVFYEFGRATNGIIALGGGYS
FGLPNVVYALVAGVIILHFLLTMTRWGRYLFAIGGNEAAARLAGIPVDLIKVSAYAFNGL
MVAITAVFLVGWLGAVTNAIGTGYELQVIASTVIGGASLTGGFGTALGAAIGAILVEVIR
NALLIAGVNPFWQGMFVGSFILAAVLLERIRSLRR