Protein Info for SMc03793 in Sinorhizobium meliloti 1021

Annotation: citrate lyase subunit beta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 PF03328: HpcH_HpaI" amino acids 13 to 230 (218 residues), 134.1 bits, see alignment E=4.7e-43

Best Hits

KEGG orthology group: K01644, citrate lyase subunit beta / citryl-CoA lyase [EC: 4.1.3.34 4.1.3.6] (inferred from 100% identity to sme:SMc03793)

Predicted SEED Role

"Citrate lyase beta chain (EC 4.1.3.6)" (EC 4.1.3.6)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 4.1.3.34 or 4.1.3.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92LA2 at UniProt or InterPro

Protein Sequence (300 amino acids)

>SMc03793 citrate lyase subunit beta (Sinorhizobium meliloti 1021)
MRAIDHHPVRLRRSVLSVPADNQRALAKACELAADAVIFDLEDSVSPDRKAAARDALVRH
LAGNRPQGETVIRVNAAGSGFGEADLAAALAARPDAILLPKVESPADIQGALDWLSERDA
PDELRLWAMIETPRGVVNGPAIAETGRTSGGRLDCFVVGLNDLRKETGVPALSGRTYLVP
WLMQILLAARGSGLDAIDAVFNDFRDPEGFEAECRQGRDMGFDGKMLIHPAQIDAANRHF
AADEAAVEEARAIIEAFALPDNSGKGVINLHGRMVERLHLEQAMKIAAKADIIEKRKAKS