Protein Info for SMc03096 in Sinorhizobium meliloti 1021

Annotation: signal peptide protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1869 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details PF04357: TamB" amino acids 1519 to 1869 (351 residues), 193.2 bits, see alignment E=4.4e-61

Best Hits

KEGG orthology group: K09800, hypothetical protein (inferred from 100% identity to sme:SMc03096)

Predicted SEED Role

"FIG01074931: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92JV3 at UniProt or InterPro

Protein Sequence (1869 amino acids)

>SMc03096 signal peptide protein (Sinorhizobium meliloti 1021)
MNQVTLFLRSALRYFFAALGTLVVVLLLLVGFLGFTVPGARVVAWAIEKYAATPDQIVRI
ADPGALLTGDFTAGTITLFDGEGIYAEVRDLSVDWSPAELFSLRFDSSRISAGSVRVERL
PVPSTETREVRSTFALPVDVKIDAFDLKEIVLGKQIAGEDHFLTARGKVDATNSSIALVL
DAAERDRPDARAAADLVFNPAGNQLKLEAELAEPKAGLLARLLRLPGEPAVNMTVTGQGP
LSDWAGSGTVTLDGSEILRLDGQHVLAAEGMHMLTVSGGGAFATLMPPAFRPLFEGESRI
DLTAAFDGTSKVRIDAGKVSTGAMTLDVSGTVDSRGENNLQARLAGTSGPFDFRWPLKDG
ELQALVDTANLSLIGDGQSAILDIAANVPSVNLPQGRLGGIRLSARSDAFNLESRSGPLK
TTVEVGESRFANAELDRAVQAPLKLDGTIAVTPEDIRFDPLEIESASIGGTVTGSFDRTE
TTLEAAFKVFAVREVLPPGLADKFDRTIALAGNAVVEQDGSVRLSELDIKSGAVDASGSV
ALAGSTLSADIQGTLPELGRLLADAEGSAAFHAVASGPLNKLGIEAEITSSGATLAGRTL
DDLVVNADATVTPGSPEAKLTATGTLDGQAIDVRADVVTRDGRTSIPTLEAKIGDNRLIG
AMELTADFKPNGTIDFNLPDLGLLAAMAGQQASGDLAGSATIRTADGVTSLALTARGESI
RRDALTVAKPVVDVTVANLARLAIKGGVRAESVVQGENRLTDIDIAFEQEAERTGFSVGA
EFEGAPLAATGDLASRDGRTEISLASASATARRIPLQLARPSVIAIENGVVHIDGLTIQA
STGTVAVTGTAGETLDISADISDLPATLIHTVAPTLGAEGKITGKVDIAGNGAAPVVRYD
LTWSGASIASVRSAGITAEDLSAKGTVTVAEDSIRLDPLAIERAGFRGDVTASLDRADNT
AEANFQFVAEPAVLPPGIGAKFDAPITVSGKVETGAGGTVELSALEVKSDTVNATGSAAL
AEGALTAEIAGALPDLGKLLAEAEGKAAFSADLSGPLDALGVKAEVTSSGAVLAGRTLSD
FVITADATAKPGSPEAKLTATGALDGQAIDVKAEVVSKDGRTSIPTLEAKVGDNRLTGAI
DLTADFKPEGTIDFNLPDLGLLAAMAGEKVSGDLSGSAAIRTANGVTSLSLKANGSGIKR
GDLTIAKPVADISIADVAALAVRGSVRAENVAQGQNRVTGPNLTFDQQGGRTGFTVDGRY
DGGPLSAKGDMVASGGRTEVRLASFAATPKRIPLKLARPTIVAIENGTVLLDALTIEASK
GTITVAGSAGPTLDISARLNALPAALINTFAPTLGAEGTIAGTVDVGGTAAAPVVVYDLR
WSGASVAAARGAGVSSLEIAAKGRFADNRVTIDATVSGPGDLSFRGGGNVELGGNMPISM
KFAGDVPFALLANIMAEQGFTLTGSAKVDLSLSGPAKAPQIAGTVSTAGARLVDVRRNLA
LNDLTANVALDGRQATISRLSANLASGGSIEASGTVGIVPGSGFPANLRIRLNNATYVDG
TLFTANLAGDLTLNGPLVSTPVLGGRLTIRRAAITIPERLPASLSQIDIKHRNAPPRVRQ
MTRDLRRDTSAGTEASGAIAFDLAVSSPGQFFVRGRGIDAELGGDLTIRGTAVQPIVSGG
FDMRRGRLEILGKRLTFTDGHIGFGGDLIPTLDLDATSSAGSTTITVNVAGPANNPTVTF
SSSPALPQDEILAQLIFNRSLNNLSAFQIAQLASAVGQLAGGGSTSLLDGLRNKLGVDDL
DITTDESGGAQVRAGKYLNDRTYLELQQGSDSASSKAVINLDIGRGVKLKGEAAGDGSAA
GGIFFEREY