Protein Info for SMc02759 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1059 TIGR02786: double-strand break repair protein AddB" amino acids 7 to 1048 (1042 residues), 1207.5 bits, see alignment E=0 PF12705: PDDEXK_1" amino acids 779 to 1020 (242 residues), 85.9 bits, see alignment E=2.2e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMc02759)

Predicted SEED Role

"FIG041266: ATP-dependent nuclease subunit B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92KV4 at UniProt or InterPro

Protein Sequence (1059 amino acids)

>SMc02759 hypothetical protein (Sinorhizobium meliloti 1021)
MPGHPNVFTIPAGLPFLRTVAERLCNGELTPGFRYDPAQPLALAGVTIFVPTRRSARVLR
SEFVDLLGGRSAILPMIRALGETDDDSGFFDAEVPAILDLAPPLSGTARLIELGRLILAW
RNRLPQVVLDIHAESPLIAPASPADAIWLARNLAELIDAIETEELDWDALDGLDGGEHAL
WWQLTLAFLKIARTYWPERLAELKHSSPARHRNAVLKAETQRIAAGKVSGPIIIAGSTGS
IPATAALIAAVKTLPNGTIVLPGLDGSMSDAEWRLIAGETSGSGTSARNPASRTHPQYGF
HRLLKRMGIELGDVPALASAADDLDYRSAVLSRALLPADATDVWMEARRSFDAERLLSAF
ADVALIEAANEREEATAIAIALRLALEADEESQAALITPDRGLARRVGTELARFGIEADD
SAGIPLSATPAGALARLLLEATLRPDDPVALVALLKHPLARFGRTADDARRAADVLELAA
LRGGTDAADVSALEAVLDKALDRQKTDRHPPPWRAGIGPDDIAMARALARRIASAVGPLS
SNLSADPQTGRHRSTVLPLSDWAERTGRALEAAAIDEQGNLGALWASEAGEILATLLRGI
IETDGQMEADGPQWCDILEALAASEAVKPRSMRHPRVFIFGALESRLQSVDLVVLGGMNE
GTWPGQTSNDPFLSRTMKAGIGLEPPERRIGQLAHDFQMACGTRRLILSRSMRQGSAPTV
ASRWLQRLQALGGERLTALLKANGADYLHWMRILDQGERQPLSERPEPKPPAELQPRKYS
FSEVTRLRRDPYAVYARRILRLEPIQPFNRDPGAAERGLLYHRIVDRFVKGGFDPAAREG
EEAMIRLTDEAFDEEKLPAHIDTIWRPRFQAVGRAFLEWERERRHGIVKSFTEVPAAMDL
GIGDIRLTGIADRLDRLADGTIDIIDYKTGSSPSPKEARALLDPQLALEAAALRAGAFRV
IGPAQPHSLRYVRLKPGSRFAVDTVNNEGAGSKETKSTGQLADESLAELRKLLSALMSGR
FGFASRLIVQKQRDYGGEYDHLARVAEWATADGEDDDEE