Protein Info for SMc02472 in Sinorhizobium meliloti 1021

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 312 transmembrane" amino acids 31 to 54 (24 residues), see Phobius details amino acids 92 to 117 (26 residues), see Phobius details amino acids 124 to 148 (25 residues), see Phobius details amino acids 154 to 172 (19 residues), see Phobius details amino acids 178 to 202 (25 residues), see Phobius details amino acids 227 to 251 (25 residues), see Phobius details amino acids 283 to 304 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 107 to 305 (199 residues), 35.3 bits, see alignment E=5e-13

Best Hits

KEGG orthology group: K02025, multiple sugar transport system permease protein (inferred from 100% identity to sme:SMc02472)

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92LI9 at UniProt or InterPro

Protein Sequence (312 amino acids)

>SMc02472 ABC transporter permease (Sinorhizobium meliloti 1021)
MTDATATMTAVPATASRKNVRYKSPTVRGRLPVLILFLPPALLLFTVFVILPMGEAAWYS
LYRWNGYGTPTQFVGLRNFEVLFNNAAFSRALINNGIIILVSVLLQIPLALWLAMMLAHR
IAGVVAFRLIFFLPYVLADVAAGLIWRFVYDGDYGLVAAIAGFFGVATPYVLADRSLAIY
AVLAVIIWKYFGFHMMLFIAGLQAVDRSVLEAAEIDGATGWQKFRYVTLPLLGSTVRLSI
FFAVIGSLQLFDLVMPLTGGGPSNSTQTMVTFLYTYGVTRMQVGLGSAVGVVLFVICVTL
AFGYKRIFMRHD