Protein Info for SMc02471 in Sinorhizobium meliloti 1021

Annotation: periplasmic binding ABC transporter protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 434 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details PF01547: SBP_bac_1" amino acids 54 to 351 (298 residues), 127.3 bits, see alignment E=1.3e-40 PF13416: SBP_bac_8" amino acids 57 to 371 (315 residues), 101.1 bits, see alignment E=1e-32

Best Hits

KEGG orthology group: K02027, multiple sugar transport system substrate-binding protein (inferred from 100% identity to smk:Sinme_3117)

Predicted SEED Role

"Multiple sugar ABC transporter, substrate-binding protein" in subsystem Fructooligosaccharides(FOS) and Raffinose Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92LI8 at UniProt or InterPro

Protein Sequence (434 amino acids)

>SMc02471 periplasmic binding ABC transporter protein (Sinorhizobium meliloti 1021)
MMLERGSAPPRATRLSALAAVAGMALLFDASHASADTVVKWLHLETVPAYVKMWEDIAAK
YESEHAGVDIQLQFLENEAFKAKLPTLLQSDDAPHFFYSWGGGVLKQQSETGALMDLTEA
MRADGGAWEKSYNPAALKGFTFDDRIYAVPFKMGTISFFYNKELFQKGGVKAEDIKTWDD
FLTAVKTLKEAGITPIAGGGGDKWPLHFYWSYLVMRNGGQQVFEDAKNNEGEGFLQPAII
KAGEQLAELGKLEPFQGGYLGANWPQTLGLFGDGKAAMILSFENTEATQRANSGDGKGLA
AENIGRFPFPAVEGGAGAATDTLGGLNGWAVTKNAPPEALDFLRYLTNAENERLMASVGM
IVPAAAGAEDGVTNPLVRASADQLAASTWHQNYFDQDLGPSVGRVVNDASVEIVSGQMSS
EEGARMIQDARELE