Protein Info for SMc02406 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1411 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF18883: AC_1" amino acids 799 to 914 (116 residues), 63.4 bits, see alignment E=1.9e-21 TIGR01414: outer membrane autotransporter barrel domain" amino acids 811 to 1411 (601 residues), 247.4 bits, see alignment E=1.4e-77 PF03797: Autotransporter" amino acids 1136 to 1386 (251 residues), 134.7 bits, see alignment E=5.3e-43

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMc02406)

Predicted SEED Role

"Flagellar basal-body rod modification protein FlgD" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92KI2 at UniProt or InterPro

Protein Sequence (1411 amino acids)

>SMc02406 hypothetical protein (Sinorhizobium meliloti 1021)
MIPAGPVLASVGFTLAIGAGAVSPAHAINECGPAIGGVVTCNTSTYPKGPGIHIEYRIDT
GLRATIDSVAVRWADDAGSDRPAIDIRSDKVTSEGDLIVTIEGSTVTTGEPDRIGTRSDR
EVGEYADGLRVTQRGAGLVSATMLSGSIITYGYNAAGIYAWQPGANENNKSDVIADFSGE
DSTIETFGSYSQGIYGRTETGIGNVAVTAKDGTIVTHGLSSIGVRGLKHSASLGDGDVTV
AGDNITVTTGGNLSIGMEARVEDSKSGRGNASVFVRNEAAIETSGTRAHGAQAFNLDPGD
STVVLEKSKITTRGEGAIGIRAEAGDGNAVTEVTKGSIATAGASAIGLAAISQGNMGEAR
VSLDGGDVSTGGDNAEGLIATAKGAGGTATARLVDGNVKTAGRDAEGLIAHAGDESIPTS
INADASVIMQAGSITTTGDGAGGMIAETDIGPTPSTGKATAVQRAGTIMTSGGEIGGNEG
SYAIAALSFGSGLASIEQAGGSATTAGAQSHALYALSIFGNTMVTQAAGSSAVATGAKAS
GLRALAGPGGGNEVTLDGKVTAGSAPAVHTIGSAGSKITIGSAAEIDGSASGTAIRDGDS
DLDAADETGGNSTATLAGKVTGDVVMGLGNDIINLTGGVLDGDVYGDDRLATAADGDDSF
TWSGGTWLSSFFGGNGSDTATVSAQSYDGTHHYLDGGDDVSTADGWTDRLNLSGVTASAN
GANIVNWEIVTLDAADVTILDGALEAGSEPETGLFLTNGSVLNGSDAFALAGNMAIDGTS
QFIAFGEDIANGVYSISGNLVNAGTVDMQDGGTGDVLSVGGNYTGAENSTVYIDTYLGDD
ASPTDHITVGGDTAGSTAISIGNAGGPSAQTVAGIRVVGVAGASSGTFVLANANSEIKET
GEAAITRGAYAYALRQVDNDDWFLQSTLAEDDTGPDTGGEQAVDPETEGGETVDPGTGGG
ETVDPGTGGGETVDPGTGGGETVDPGTGGGETVDPGTGGGETVDPGTGGGETVDPGTGGG
ETVDPGTGGGETVDPETGGGETVDPGTGGGETVDPGTGGGETVDPGTGGGETVIPSYNQG
VPVYETYARNLLGFIQLPTLRRRASGERVPALRSCGSVPLNVEGNQTAACAEDNTVWARI
DGTRAHVEPEESGARVSEYDSRSWLLQAGIDALLHSSGKGELIGGLTAHYGGINTDVSSF
YGDGSIDTRGYGLGATLTWYGQNGFYLDGQGQLTRFDSDLDSDILGRLADGNDGLGYAVS
IEAGHRIGLGDTWALTPQAQLVNTSVNFDDFVDPYGARVSLDDGNSLRGRIGLALDREQQ
WQGAEGDGRSSRLYGTIDLYREFLGDTRADVSGVSFGIEADDWIGEIGIGGSYNWGDDKY
SLYGEARASTGLSDFGGSYAVRASVGLKMKF