Protein Info for SMc02072 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 945 transmembrane" amino acids 600 to 621 (22 residues), see Phobius details PF05036: SPOR" amino acids 865 to 944 (80 residues), 47.8 bits, see alignment E=7.5e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMc02072)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92Q30 at UniProt or InterPro

Protein Sequence (945 amino acids)

>SMc02072 hypothetical protein (Sinorhizobium meliloti 1021)
MADKQFARSGPAEFEPLADDDPLSELARIVGYDARPAVQQLQELQRHQEAMRREPAFDLE
EELLRAFDSYDTPHAAPVRPDSGLVEHPSAAVPTDGPHSVFDEQAAQNAVVADVAPAPEE
VAEAAALPSIETPVEWTSNGDLAAVAAPHDEPAVDLERELELSLGYDASPDATDAAQPGS
VPADVSDVPIFSDWQEPLSAKLAVAGKLAEQAGLAEPVYVDMAGDLAGAVESDELADIAV
APPELPSQPSASTGADRLLTDVERFPVPAAAEAAAPAVAETQDRPAPAAVKKNNYPFTPT
FSRATPVASSGGVSQQRAFATPTVETAVASAAATSPAVVAQSVSPERAPEMRAEAAPQIP
ENRMPEAEVEPSFDIEDFELELADIALDLDLADSPVAEAPASVVATQAAVAHPALVETPA
QPYLQAMAAPREPETFVHQAPVSARDMSVPVEPEKPSADVALPFDPAMIGETESGVAPIG
ELDVPQLPPVETEEKAAAYPADYDLDIDAEMAQLFSAPTPAAKNGADLEPVSVSADKAGP
ALAPADDFDEFEKAMEEDFQRSMAERRSATQEAERVTAMPHARAEEYREEGYGRRSQRSM
LLAASVAGIIIVGGAAVYAWMGGSNAVLSGDGPKIILADKAPVKVVPEEKGGKTVPNQDK
AVYDRVAGVSGKAPLQQSLVSSTEEPMDVVQRTLTPETLPLEGRGDVEMLPGASPADDDE
VARLLPGADAGNATDEEEAVPAVAPRKVRTMIVKPDGTLVPREEPAPQPESAAVAAGGAA
PIPARASGEAVAAGSQAEATAAAPPDQLAAASEGVTPVRSVKTTALPQARPAAQPEAAAP
AAAPAESQPATETAAAPLATASVPAGSYVIQIASLPSEAEAQKSYNNLSSKFASVIGGRG
VDIRKAEIAGKGTYYRVRIPVGSREEANSLCSRYKSAGGSCLVTK