Protein Info for SMc01793 in Sinorhizobium meliloti 1021

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 389 PF13439: Glyco_transf_4" amino acids 16 to 191 (176 residues), 78.8 bits, see alignment E=1.3e-25 PF13579: Glyco_trans_4_4" amino acids 17 to 187 (171 residues), 60.4 bits, see alignment E=6.8e-20 PF00534: Glycos_transf_1" amino acids 203 to 342 (140 residues), 79.5 bits, see alignment E=5.6e-26 PF13692: Glyco_trans_1_4" amino acids 204 to 339 (136 residues), 88.7 bits, see alignment E=1.1e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMc01793)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92QS5 at UniProt or InterPro

Protein Sequence (389 amino acids)

>SMc01793 glycosyltransferase (Sinorhizobium meliloti 1021)
MSERPLRILHCFRSPVGGIFRHVRDLAEAHANAGHQVGILCDSTTGGTHEDALFEEVRPH
LALGIIRVPIHRSIGASDAAALWRGYKEIRSLQPDVLHGHGAKGGVLARIVGSALRVNKY
RVARLYSPHGGSLHFERRSLAGSLILRVERLQERLTDALVFVCEYERRTYGARVGLPLAR
NELIYNGIDDAEFEPVETGPGAVDFLYIGMMRDLKGPDLFIEGFAAAEEIAGRRLSALMV
GDGPQQRQYEEMTLRMGLADRVRLLPAMRAREAFALARKVVIPSRAESMPYILLEALAAG
KPVIATRVGGIPEVLGADSEALVPPGDAGALARLMADAIGDAGWAARTMPDAERFKSRFA
ASVMTRHVMQLYRDLTEESLVPQGRLRTT