Protein Info for SMc01615 in Sinorhizobium meliloti 1021

Annotation: transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 261 PF25212: HVO_A0114" amino acids 5 to 55 (51 residues), 32.2 bits, see alignment 2.5e-11 PF08279: HTH_11" amino acids 6 to 50 (45 residues), 35.1 bits, see alignment 3.6e-12 PF08220: HTH_DeoR" amino acids 6 to 61 (56 residues), 59.7 bits, see alignment E=6.5e-20 PF13412: HTH_24" amino acids 6 to 50 (45 residues), 24.7 bits, see alignment 4.7e-09 PF09339: HTH_IclR" amino acids 9 to 52 (44 residues), 27.4 bits, see alignment 8e-10 PF00455: DeoRC" amino acids 77 to 230 (154 residues), 143.8 bits, see alignment E=1.6e-45

Best Hits

KEGG orthology group: None (inferred from 100% identity to smk:Sinme_2207)

Predicted SEED Role

"Glycerol-3-phosphate regulon repressor, DeoR family" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92NH7 at UniProt or InterPro

Protein Sequence (261 amino acids)

>SMc01615 transcriptional regulator (Sinorhizobium meliloti 1021)
MKPEDRRQAIMDVLMEAGTASVEELALRFGVSKMTVHRDLDDLEQAGLLRKVHGGASIQS
SPQFESDFRYREKIATGEKRRLAQHAATLIEPGQSIIIDDSSTAGAIAGFVRDIRPLTVI
TNNLGVIADLSGAPGINLIALGGHYSKKFNGFFGVVTEEALRSLRADVAFLSSSAIEGAS
AFHQDQEVVQIKRQMVKSASRKYLLVDHGKFGRSALHFLTGLTAFDAVLTGNEVSEGNAA
ALGDAGVKLVRIDVRKILENA