Protein Info for SMc01579 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 238 PF13614: AAA_31" amino acids 1 to 50 (50 residues), 47.6 bits, see alignment 4.7e-16 amino acids 70 to 134 (65 residues), 28.1 bits, see alignment E=4.6e-10 PF07015: VirC1" amino acids 1 to 186 (186 residues), 59.2 bits, see alignment E=1e-19 PF09140: MipZ" amino acids 3 to 42 (40 residues), 29.2 bits, see alignment 1.5e-10 PF01656: CbiA" amino acids 4 to 182 (179 residues), 61.9 bits, see alignment E=1.5e-20

Best Hits

Swiss-Prot: 37% identical to PARA_RHIRD: Protein ParA (parA) from Rhizobium radiobacter

KEGG orthology group: K03496, chromosome partitioning protein (inferred from 100% identity to smd:Smed_2127)

Predicted SEED Role

"Plasmid partitioning protein ParA" in subsystem pVir Plasmid of Campylobacter

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92NJ2 at UniProt or InterPro

Protein Sequence (238 amino acids)

>SMc01579 hypothetical protein (Sinorhizobium meliloti 1021)
MAVITFANAKGGAGKTTAALILSTELARQGNRVVVLDADPQRWITSWSEVSGRVANLEVI
SHVTPASLPCHIRELKGEADFIVIDLAGAKDAIVALALGLSDHVLIPVQGCAMDARGAVQ
ILELIRHIGEKARVRINHSVVLTRVNSLVTTRALQTIKALLASRGVSVLDTPIVERVAYR
EIFECGGTLQMMDPNRVSNLDKARENAYALAAEVQNLLPVTARRALMSRLRSALPRAA