Protein Info for SMc00838 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 604 signal peptide" amino acids 18 to 20 (3 residues), see Phobius details transmembrane" amino acids 21 to 40 (20 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMc00838)

Predicted SEED Role

"AsmA family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92KM7 at UniProt or InterPro

Protein Sequence (604 amino acids)

>SMc00838 hypothetical protein (Sinorhizobium meliloti 1021)
MFQILRDSRLWARLRRRHLVWSAAIGIALAAAYNAALPLVVSTTEARATMERMLDDWSGG
KSTISGEPEVRFWPEPLVTLPATTIVSTGPEPLRLAEIGRITASFSLLSALRGEQALEEI
TLVDPVITLERGADGAVNWQKPDWLVPPGNAMPRDEAPFGDITIENGRFRVVDRLAATGE
GVDVAGISGTLKWPSFGGRLSAQFAAVIGGEAVGWAFVCEEPLALFARRNAALKTSLTSA
PLTFSFEGTGNFSSQPFASGHLQMSAPSLAALAAWYRGAPDAELPPGGFSIDTRVTTGET
ALKLEELQLAIGEATATGVLDVQLPSGKGPRVEGTLAFDRIDLNGLPLATLKPAQGDDRG
WRMAQALVGGWRLDVRLSSQEVLAGPLHLTDVAAGVMIDGSRVSLDIGDSTYANGRLSGR
AVLSEKGVGQGGKLQVNLKDADFAAVLDSFGLKGPVPTGRGVLSVDLATGRPLWEAGVAD
VFGRVDYSLTNGRLADFDVHAFTDLVRKGEFFSLSQASDGTLEFQTADIEASFGGGTARL
DRAAFVGPAGNISVTGVVPYRSGSLALAGTLAAPEAGKEPLQFFIGGSWPNAVISPLSVL
LSPK