Protein Info for SMc00616 in Sinorhizobium meliloti 1021

Annotation: permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 371 transmembrane" amino acids 14 to 47 (34 residues), see Phobius details amino acids 63 to 89 (27 residues), see Phobius details amino acids 155 to 177 (23 residues), see Phobius details amino acids 219 to 246 (28 residues), see Phobius details amino acids 249 to 270 (22 residues), see Phobius details amino acids 276 to 293 (18 residues), see Phobius details amino acids 312 to 343 (32 residues), see Phobius details PF01594: AI-2E_transport" amino acids 13 to 343 (331 residues), 231.6 bits, see alignment E=7e-73

Best Hits

KEGG orthology group: None (inferred from 100% identity to smk:Sinme_0981)

Predicted SEED Role

"Putative permease often clustered with de novo purine synthesis" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92QW1 at UniProt or InterPro

Protein Sequence (371 amino acids)

>SMc00616 permease (Sinorhizobium meliloti 1021)
MGDRVSSMGLQRQIFFWLLVLVGFIAFLLVFSSILLPFLAGMALAYFLDPVADRLERLGL
SRLMATIAILVAFVVVLALSLMIIVPLVVTQAAEFIQKMPGYITRLQEFLTDSQSTLLPD
WLAGQMTTIKQNSAKLLEQGASFLGTLFQQIWNSGLALLNILSLFVITPVVAFYLLLDWD
RMVDRVDSWIPRDYVEVVRQIARDMNTTIAGFVRGQGSLCLILGLYYGIGLTMVGLNFGL
LIGLFAGMISFIPYVGSLVGLVLALGVALVQFWPDYVWILLVLAVFFSGQFLEGNILQPK
LVGKSVGLHPVWLMFALLAFGALFGFVGLLVAVPAAAAIGVLVRFGIQRYLDSDLYHGHR
TAVHKEPESHG