Protein Info for SMc00559 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 256 transmembrane" amino acids 38 to 59 (22 residues), see Phobius details amino acids 66 to 87 (22 residues), see Phobius details amino acids 93 to 112 (20 residues), see Phobius details amino acids 125 to 142 (18 residues), see Phobius details amino acids 154 to 180 (27 residues), see Phobius details amino acids 187 to 205 (19 residues), see Phobius details amino acids 230 to 248 (19 residues), see Phobius details PF03591: AzlC" amino acids 42 to 181 (140 residues), 118.9 bits, see alignment E=1.1e-38

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMc00559)

Predicted SEED Role

"FIG01076189: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92R05 at UniProt or InterPro

Protein Sequence (256 amino acids)

>SMc00559 hypothetical protein (Sinorhizobium meliloti 1021)
MTVFRPEARSFRRLVLQVREIPGVKKSRAVEEFWGGFRAMAPLIVAVMPIGLVFGAVAAT
KGLSSLEVVMMSALVFAGGSQFVALDIWTHPASWAALGFSALLVNIRHLLMSASIGTKMP
AFSGPARYAAMLLLADEIWAMAEVRAGESRLTPAWYAGLAVPFYLAWVLAGLAGSLAGAF
LGDPKALGLDFAFPAVFIVLVMGFWKGRETGAILAASAAAAVLARQFLPGVWYIAAGSAA
GVVAALFTGERQEARA