Protein Info for SMc00532 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 425 TIGR01981: FeS assembly protein SufD" amino acids 145 to 407 (263 residues), 274.5 bits, see alignment E=4.7e-86 PF01458: SUFBD_core" amino acids 169 to 395 (227 residues), 239.9 bits, see alignment E=1.3e-75

Best Hits

KEGG orthology group: K09015, Fe-S cluster assembly protein SufD (inferred from 100% identity to smk:Sinme_1637)

Predicted SEED Role

"Iron-sulfur cluster assembly protein SufD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92PL1 at UniProt or InterPro

Protein Sequence (425 amino acids)

>SMc00532 hypothetical protein (Sinorhizobium meliloti 1021)
MNMQQAIKMTAAETALVDAYTAQIGDLPGDGAVLSLRDTLVHELKTAGLPTRRVEAWHYT
DLRTLLRAVPAADPTAFADRVEPVVPGSSVLSVRNGQADIKSVPEHLTARSYTESLLDGS
AVAGLSVLGSDDAIGRINGGLVRGGLEITVAAGAQIEAPIEIQVVQSHGQAHTRFPVSFG
AGAKATVIERHLSTNAEPSFVSSVSDVTLADGADVIWIILQQQGPADTHLGQIRFDLGKD
AKLHLFVINAGGKLVRQELHGRASGEGSDLTLRGINLLGGDSHTDLTFTLSHDVPHTTSS
EIIRNVVFDRAKGVFQGKILVAQDAQKTDAKMSCNTLLLSDDADFSAKPELEIFADDVQC
GHGATVIDIDHTQLFYLLARGIPENKARAMLVNAFVAEIVEELEDDEALVEALEDIVAAW
LEKHA