Protein Info for SMc00279 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 388 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 36 to 56 (21 residues), see Phobius details amino acids 79 to 99 (21 residues), see Phobius details amino acids 112 to 134 (23 residues), see Phobius details amino acids 145 to 163 (19 residues), see Phobius details amino acids 170 to 194 (25 residues), see Phobius details amino acids 230 to 250 (21 residues), see Phobius details amino acids 257 to 280 (24 residues), see Phobius details amino acids 292 to 312 (21 residues), see Phobius details amino acids 328 to 347 (20 residues), see Phobius details amino acids 353 to 370 (18 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to smk:Sinme_1613)

Predicted SEED Role

"Choline transporter BetT, short form"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92KC0 at UniProt or InterPro

Protein Sequence (388 amino acids)

>SMc00279 hypothetical protein (Sinorhizobium meliloti 1021)
MSYIISTAYAAVLLSAVFVIVRWGSVHCRGQTPVGIYTFVALLFTAGLDMGLVMLPLTEF
PAYAADDAYGFTNPLAIEFGMWGPLVWMMYFLSAFYFVVLEPRLRIFEIALVKWVYNLTV
IATCAFTCYLFLTALPSYIEGISMPARWAIVVAVIAASVYSSSNVSFMKWLAVTSTWMFV
TLAVVALLAAAYYYSDIGISGLASNMGLLSDYFANLHRFVSPITEYHEFYLFWWFSWSIM
IGQFVSMFAGGLRTWRLAVAMILLPSIPLAVWFAVLYIYFQQQIVFPTWLNWFMVTVGII
FVVNSLDSLIRLYGLNLGWTKSRLGARAYYPLHFLLQLGLVMAYQFTPFRIEWVGVIVIG
IYAAIYVLILRHHVHVRAAVTEARCAAA