Protein Info for SMa2408 in Sinorhizobium meliloti 1021
Annotation: RhbE rhizobactin siderophore biosynthesis protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 100% identical to RHBE_RHIME: Rhizobactin siderophore biosynthesis protein RhbE (rhbE) from Rhizobium meliloti (strain 1021)
KEGG orthology group: K00540, [EC: 1.-.-.-] (inferred from 100% identity to sme:SMa2408)MetaCyc: 100% identical to 1,3-diaminopropane N-monooxygenase (Sinorhizobium meliloti Rm2011)
1.14.13.M65 [EC: 1.14.13.M65]
Predicted SEED Role
"Siderophore biosynthesis protein, monooxygenase"
MetaCyc Pathways
- rhizobactin 1021 biosynthesis (6/7 steps found)
- acinetoferrin biosynthesis (1/4 steps found)
- baumannoferrin biosynthesis (3/11 steps found)
KEGG Metabolic Maps
- Alkaloid biosynthesis I
- Carotenoid biosynthesis - General
- Insect hormone biosynthesis
- Nucleotide sugars metabolism
- Porphyrin and chlorophyll metabolism
- Puromycin biosynthesis
- Trinitrotoluene degradation
- alpha-Linolenic acid metabolism
Isozymes
Compare fitness of predicted isozymes for: 1.-.-.-
Use Curated BLAST to search for 1.-.-.- or 1.14.13.M65
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q9Z3Q8 at UniProt or InterPro
Protein Sequence (456 amino acids)
>SMa2408 RhbE rhizobactin siderophore biosynthesis protein (Sinorhizobium meliloti 1021) MIMTDFDLAGIGIGPFNLGLAALLSSHENLSNVFLERKPAFRWHEGLILPGTTLQVPFMA DLVTMADPTHRLSFLNYLAVHDRLYKFYFYENFMIPRQEYDHYCRWASQQLSACRFGEEV VDVAHESASDSFIVESRSASGGKQQYRSRNIAIGVGTAPFLPKWAQIKTLAPLMHSSEFG RRRLELSKRRRVTVIGSGQSAAECVLALLNDLTPEMVAAGASIQWITRSAGFFPMEYSKL GLEYFTPDYMRHFHRIAPVRRREIVADQGLLYKGISFSTIGEIFDLMYERSVGGRDPGLA LFSNCAVETLESAGGSGSFRIGINHNHLDEKATVETDAIVAATGYRHAWPEWLGSLKGSV LDTCEWGDLVVGGDFRARRSDGGKGHVFVQNAETFHHGVGAPDLGLGAFRNAVIVNQLLG REHYRVNASASFQKFGLPSSQTAPSSISGDFYAHAS