Protein Info for SMa2404 in Sinorhizobium meliloti 1021

Annotation: RhbC rhizobactin biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 585 transmembrane" amino acids 487 to 502 (16 residues), see Phobius details PF04183: IucA_IucC" amino acids 135 to 369 (235 residues), 204.8 bits, see alignment E=1.6e-64 PF06276: FhuF" amino acids 400 to 558 (159 residues), 118.8 bits, see alignment E=3.3e-38

Best Hits

Swiss-Prot: 100% identical to RHBC_RHIME: Rhizobactin siderophore biosynthesis protein RhbC (rhbC) from Rhizobium meliloti (strain 1021)

KEGG orthology group: None (inferred from 100% identity to sme:SMa2404)

MetaCyc: 100% identical to N-(3-aminopropyl)-N-hydroxyacetamide--citrate ligase (Sinorhizobium meliloti Rm2011)
6.3.2.-

Predicted SEED Role

"Siderophore synthetase superfamily, group A @ Siderophore synthetase large component, acetyltransferase"

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q9Z3R0 at UniProt or InterPro

Protein Sequence (585 amino acids)

>SMa2404 RhbC rhizobactin biosynthesis protein (Sinorhizobium meliloti 1021)
MHAHNAATLTLRSLLNCVAREFPDHVRWLETQGHLRFMLTFPEGGGSLGLPAHYRSATGH
HLFGEPVMLTDENGAKTVDAVEAISAVIERLEPSIAAKDGRVDLLNRTHSSRLLIEAALH
ARNGDLAALAGDEVSFVAAEQGLIAGHGIHPCPKSREGMTEAESRRYSPEFAAGFPLRWF
AVESELFHTGHSQGSPSAEEWLKEAMGSDIDALKAPLPAGDFSLLPVHPWQADQMLKDPT
VAALVAAGRMIDCGEAGKPWFPTSSVRTLYRPDASFMLKMSLGVGITNSVRVNLARELLR
GDDMYRFRRHELWQDFSRSYPGLTLIPDPAFMGVKIDGALIDGLSVSMRENPFTGANADR
NVSLLAAVCEHLPDRGSRLGALIRNRAHLERRPLDIVARDWFERFLTIFVRPIFGLYLRH
GIAMEAHQQNIVVEIEHGYPIGLFYRDNQGFFHHERAHGALVEALPGFGEPSESVFGEEP
VDERLLYYAFINSVLGMVGALGREGLVSETALLAMLRRELLRLEALEGANSGIVRKMLAP
TLQCKANLKTRLARMDELVGPLETQSVYLQITNPLFETEKVLAHA