Protein Info for SMa2033 in Sinorhizobium meliloti 1021

Annotation: Transglycosylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 265 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF13406: SLT_2" amino acids 37 to 234 (198 residues), 164.3 bits, see alignment E=2e-52

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMa2033)

Predicted SEED Role

"Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-)" in subsystem Peptidoglycan Biosynthesis (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92XX5 at UniProt or InterPro

Protein Sequence (265 amino acids)

>SMa2033 Transglycosylase (Sinorhizobium meliloti 1021)
MAFFAKEQLIAAAGSLAFCLLTCVAEAASCGKSAAGFQQWKVEFAETAKAAGVRGKGLAA
LLGAKYAVGTIRADRSVNKAFSGSVDDFMRRRGGSAIISKGRSLKTANAALFGNIERKYD
VPAGVLLAIWGMETGFGASMGNQNTVSAIVTLAYDCRRPQFFAPHAIAALKLVDSGVLSA
RSVGAMHGEIGQTGFLPGNVLKYGVGSRNMRDTSTALMSTANFLKAHGWRAGGGYQGNMG
AIAGWNSASVYQKAIARIGEAIDGR