Protein Info for SMa1937 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 412 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 49 to 72 (24 residues), see Phobius details amino acids 84 to 107 (24 residues), see Phobius details amino acids 113 to 133 (21 residues), see Phobius details amino acids 140 to 163 (24 residues), see Phobius details amino acids 169 to 188 (20 residues), see Phobius details amino acids 209 to 234 (26 residues), see Phobius details amino acids 251 to 272 (22 residues), see Phobius details amino acids 280 to 298 (19 residues), see Phobius details amino acids 304 to 325 (22 residues), see Phobius details amino acids 337 to 360 (24 residues), see Phobius details amino acids 367 to 388 (22 residues), see Phobius details signal peptide" amino acids 31 to 31 (1 residues), see Phobius details PF07690: MFS_1" amino acids 22 to 345 (324 residues), 126.9 bits, see alignment E=8.9e-41 PF00083: Sugar_tr" amino acids 49 to 153 (105 residues), 24.5 bits, see alignment E=1.2e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMa1937)

Predicted SEED Role

"FIG00761799: membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92Y26 at UniProt or InterPro

Protein Sequence (412 amino acids)

>SMa1937 hypothetical protein (Sinorhizobium meliloti 1021)
MIVSQFTSGGSAWPRISLVVGAGVVSAFQVGKAPAALAAVQGDLALSLAAASWLISAFAI
LGALAGAPIGLAVDRIGARTMASLGLLLQAAGSALGALSPGFTALLATRVIEGLGFLCLV
VAAPALIAGLAPIQIRDRAMALWASFMPVGLTVIMLAAPLLSIVTWRGFWFLNASILVSY
AMLLRWGLHPPPNHPRPYRKIHQDIGEALVSPGPWVLGGLFTAFSAIFFAVFGLLPPLLS
QRLGISNETASMLSALAIAASGVGNLVCGQLLARGFQPARLLNFSFGIMALCGIGIFSHT
LWAIASYALCVVFSFAGGLIPVVIFDSAPRQAPGAELVGVTIGFAMQGNNLGLIIGPAAA
SGLAGAFGWPMVSVAVVGIAFVAALLVLPFNRRQLTEAASGQSPLTRAGGRF