Protein Info for SMa1814 in Sinorhizobium meliloti 1021

Annotation: dioxygenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 530 transmembrane" amino acids 18 to 36 (19 residues), see Phobius details amino acids 50 to 74 (25 residues), see Phobius details amino acids 84 to 105 (22 residues), see Phobius details amino acids 111 to 134 (24 residues), see Phobius details amino acids 147 to 196 (50 residues), see Phobius details amino acids 229 to 248 (20 residues), see Phobius details amino acids 260 to 281 (22 residues), see Phobius details amino acids 292 to 311 (20 residues), see Phobius details amino acids 317 to 340 (24 residues), see Phobius details amino acids 352 to 373 (22 residues), see Phobius details amino acids 379 to 400 (22 residues), see Phobius details PF05977: MFS_3" amino acids 8 to 529 (522 residues), 821.3 bits, see alignment E=3e-251 PF07690: MFS_1" amino acids 22 to 365 (344 residues), 114.8 bits, see alignment E=4.2e-37

Best Hits

KEGG orthology group: None (inferred from 100% identity to smk:Sinme_6205)

Predicted SEED Role

"MFS permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92Y88 at UniProt or InterPro

Protein Sequence (530 amino acids)

>SMa1814 dioxygenase (Sinorhizobium meliloti 1021)
MTDVTAPTSGFAPLRQKVFAVLWIATIVGNTGSFIRDVASSWLVTDLSAAPAAVAMVQAA
ATLPIFLLAIPAGVLSDILDRRKFLIVIQLLLAAASICLMLLSATGLQSVSSLIALTFVG
GIGAALMAPTWQAIVPELVARQDVKSAVALNSLGINISRSIGPAVGGLLLAWFGAAFTYG
VDVISYVFVIVALTWWRRAATPDDVLSERFFGAFRAGLRFAKASRELHVVLLRAAVFFAF
ASAVWALLPLVARDLLDGDAGFYGILLGAVGAGAIGGALILPRLRTRFDADALLLGAAVV
TAAVMAILSVAPPRWGAIVALLALGAAWITALTTLNGAAQAILPNWVRGRSLAVYLTVFN
GAMTAGSLAWGAVAEALNIPLTLNISAIGLAAAGLLFHFVKLPKGESDLIASNHWPEPLV
AALVDNDRGPVLILIEYKVDKTERPDFLKALAKLSNERRRDGAYGWGVTEDAADPERIVE
WFMVESWAEHLRQHRRVSKADADVQQEVRRFHKGAEAPVVSHLLSINRPQ