Protein Info for SMa1735 in Sinorhizobium meliloti 1021

Annotation: oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 354 PF00970: FAD_binding_6" amino acids 34 to 124 (91 residues), 49.5 bits, see alignment E=6.7e-17 PF00175: NAD_binding_1" amino acids 134 to 240 (107 residues), 58 bits, see alignment E=2.2e-19 PF00111: Fer2" amino acids 282 to 346 (65 residues), 54.3 bits, see alignment E=1.6e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to smk:Sinme_6153)

Predicted SEED Role

"Flavodoxin reductases (ferredoxin-NADPH reductases) family 1" in subsystem Anaerobic respiratory reductases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92YC9 at UniProt or InterPro

Protein Sequence (354 amino acids)

>SMa1735 oxidoreductase (Sinorhizobium meliloti 1021)
MLMEASFPFSLSAANQQPCYRGGPATLVCKAVIDETHDSKTFVFEDSQSRSFDFKPGQYI
SFKFEIEGKLCPRAYSICSTPTRPHNVQITVKRVPGGLVSNWLNDHMRPRMSVEIADIAG
RFNYFDIPSRKPLLLSGGSGVTPVMSMLQYITDVVDQVDVEFVHFARTPKDIIFRDQLEF
IARRFSNIKVHMVVGETGEETCFRGRMGTISASLMQSLVPDLPQREIFMCGPEGFMKAAR
AMAAEVPIRAVYEESFGERIPIEEPDKLGGEVYFSLSGKHGTCAPGETILEAALNSGIWI
ESSCHQGVCGSCKVKLTQGMVDMQDLGGLPACERSEGFVLACCSRPMGSVSIDA