Protein Info for SMa1704 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 409 transmembrane" amino acids 36 to 55 (20 residues), see Phobius details amino acids 65 to 88 (24 residues), see Phobius details amino acids 99 to 117 (19 residues), see Phobius details amino acids 123 to 145 (23 residues), see Phobius details amino acids 156 to 176 (21 residues), see Phobius details amino acids 183 to 203 (21 residues), see Phobius details amino acids 224 to 241 (18 residues), see Phobius details amino acids 253 to 272 (20 residues), see Phobius details amino acids 293 to 313 (21 residues), see Phobius details amino acids 326 to 347 (22 residues), see Phobius details amino acids 355 to 374 (20 residues), see Phobius details amino acids 380 to 401 (22 residues), see Phobius details PF06772: LtrA" amino acids 35 to 395 (361 residues), 332.1 bits, see alignment E=2.4e-103

Best Hits

Swiss-Prot: 100% identical to Y4337_RHIME: Uncharacterized protein RA0937 (RA0937) from Rhizobium meliloti (strain 1021)

KEGG orthology group: None (inferred from 100% identity to sme:SMa1704)

Predicted SEED Role

"FIG01074783: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See O33683 at UniProt or InterPro

Protein Sequence (409 amino acids)

>SMa1704 hypothetical protein (Sinorhizobium meliloti 1021)
MSRESLYISACHPYEGSMAENHTHWLRKENTDQTKASFPELFFDLVFVFALIQLSESLSD
DFSLGIAAEAVLFIFALWWVWIHTTWVMDLLDTEIEPVRLLLFTLMFFGIVMAIALPEAF
KGMGLLFAVAYSAMQVSRSLFALYAFRRGDPASFMTFFRITAWLTISSTFWITGGLSEPH
LRVVLWIVALVVEYTGPTVRYWVPLIGASPRETLDIDGEHLAERSALFVIIALGETILTI
GKHTFSNLETEGTPWVLCFSFLTTVLMWWIYFHDGQQRAADKAEDTSKPQTTAQYLFTYG
HLPIVGGIIFTAVGEDFSLAHPYQLGTYNFALAQLGGPILFLAGTMWMKRVSSRVLPYSH
VFGISLLTASFTLVPFVANFAIQALTGVILLVVAVWEYVALKHLRRSAA