Protein Info for SMa1617 in Sinorhizobium meliloti 1021

Annotation: integrase/recombinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 409 PF00589: Phage_integrase" amino acids 221 to 393 (173 residues), 85.4 bits, see alignment E=6.1e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMa1617)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q925Y2 at UniProt or InterPro

Protein Sequence (409 amino acids)

>SMa1617 integrase/recombinase (Sinorhizobium meliloti 1021)
MDANSRNRWFLDPGPLSSWIDQFADDLAAQRYTPLTIEGYTASARHFAAWLGCAGISIDL
IDDDVVRRFAEHRCRCPGRRQWLRISPKYSRRARRFVVFLQKEGVARPPLKVASPYPLLD
DYQSWLRVHRGLAERTIARHLRHLHKLLPELGTPTLDYDAALIRNVVREWRERTGPADLR
TITSALRSYLRFLAGVGLCRPNLDHAIPPVLQWRLSSLPRYLAAADVERVIASCDQLTRG
RLRDRAILLLLARLGLRAGDVAGLRLSDIEWTSGMLRLSGKARRQVRLPLPQDVGDALLA
YIEQERPRMHQEAVFLTMIAPYRSFAQSSHVSTIVALALKRAGISDPPSTGACLLRHSAA
TSMLRSGATLEAVGTVLRHRSLDMTAHYAKVDAAMLEQVAQPWPGELPC