Protein Info for SMa1435 in Sinorhizobium meliloti 1021

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 305 transmembrane" amino acids 27 to 50 (24 residues), see Phobius details amino acids 71 to 90 (20 residues), see Phobius details amino acids 97 to 120 (24 residues), see Phobius details amino acids 129 to 152 (24 residues), see Phobius details amino acids 156 to 175 (20 residues), see Phobius details amino acids 206 to 228 (23 residues), see Phobius details amino acids 260 to 284 (25 residues), see Phobius details PF00528: BPD_transp_1" amino acids 111 to 292 (182 residues), 100.3 bits, see alignment E=5.7e-33

Best Hits

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 100% identity to smk:Sinme_5977)

Predicted SEED Role

"FIG00790846: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92YS9 at UniProt or InterPro

Protein Sequence (305 amino acids)

>SMa1435 ABC transporter permease (Sinorhizobium meliloti 1021)
MTDLALPSVRSPGALRQLAIYLTRDKLALCAAVFLLVLIVCVLVGPLFVGELAGKLGLRQ
RNLPPFALEHGFIYILGADTLGRPILARLIVGAQNTLGIAAAAVFCSMALGGILGLAAGY
SERWYSHVILRLADVVMSFPSLLLALIVLYTLGPSMTNLVIVLAITRMPIFIRTARAEVL
ELRERMFVSAARSMGASTGRILFRHIAPLVLPTLVTIAAIDFATVILAESSLSFLGLGIQ
PPDFTWGAMVANGRGYLKTAWWIAFWPGLAILLTTLSLNILASWARTVADPLQRWRLQSL
RKAPR