Protein Info for SMa1424 in Sinorhizobium meliloti 1021

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 321 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 40 to 62 (23 residues), see Phobius details amino acids 71 to 89 (19 residues), see Phobius details amino acids 95 to 116 (22 residues), see Phobius details amino acids 125 to 144 (20 residues), see Phobius details amino acids 163 to 183 (21 residues), see Phobius details amino acids 215 to 236 (22 residues), see Phobius details amino acids 245 to 265 (21 residues), see Phobius details amino acids 270 to 291 (22 residues), see Phobius details amino acids 295 to 316 (22 residues), see Phobius details PF02653: BPD_transp_2" amino acids 39 to 308 (270 residues), 100.9 bits, see alignment E=3.5e-33

Best Hits

KEGG orthology group: K10440, ribose transport system permease protein (inferred from 100% identity to smk:Sinme_5971)

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92YT5 at UniProt or InterPro

Protein Sequence (321 amino acids)

>SMa1424 ABC transporter permease (Sinorhizobium meliloti 1021)
MTRPISRETLIKWAPLLVLIALVIFFTVLNPTFFSARNFARIAIASAPALMVAVGVTFII
IMGSIDLSMEGVISLTAVLFSFAFIKLGGTLLGTAWLALPLILIIGGLIGFLNGLVHVKL
RVPSFMASLAMGFVGTGAAILITGGDIVRVSDPAFRGLLTVRWLGFPLMVYVAAVFLIVA
WFIQEHTRLGRNFYAVGGGEELAHASGLDVSRVRIAGFALAGVFYAIAAVLVVARIGQAE
SVTGSNFMFVSITSVVVGGVALWGGIGGVWNALIGVLIVGVINNGMVVIGLPDFLQDGVL
GLLVILAVVLSTDRKLVSFVK