Protein Info for SMa1397 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 382 PF06187: DUF993" amino acids 3 to 382 (380 residues), 599.5 bits, see alignment E=1.4e-184

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMa1397)

Predicted SEED Role

"Conserved hypothetical protein potentially related to ribose or hydroxymethylpyrimidine metabolism"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92YU9 at UniProt or InterPro

Protein Sequence (382 amino acids)

>SMa1397 hypothetical protein (Sinorhizobium meliloti 1021)
MKIALPDAEGRLAEYSLSGNAIAGAALGPGRARVVYSAAHVVADPFTANEPSGRATVDWP
KTLEFRRYLAGLGLGIAEAMDTAQRGMGLDWAGALELIRRTKAELPDALVANGCGTDHLD
LSRSHSIDDVRRAYLDQVEAVQKLGGRIILMASRALVRAARGPDDYISVYSDVLDACDHP
VILHWLGDMFDPQLAGYWGSQTFQPAMQTALAVIGANVRKVDGIKISLLDKDKEIVMRRL
LPAGVKMYTGDDFNYPELIEGDEQGFSHALLGIFDPLAPAAAFAVQRLGEGDVSAFRATL
DPTVPLARLIFRAPTQHYKTGVVFLAWLNGFQDHFVMLNGAQAMRPLPYFTEVFRLADQC
GLLRDPEVAVTRMKRLLAVYGV