Protein Info for SMa1329 in Sinorhizobium meliloti 1021

Annotation: Peptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 420 PF01321: Creatinase_N" amino acids 18 to 164 (147 residues), 46.7 bits, see alignment E=4.7e-16 PF00557: Peptidase_M24" amino acids 171 to 376 (206 residues), 104.3 bits, see alignment E=7.8e-34

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMa1329)

Predicted SEED Role

"Macromolecule metabolism; Macromolecule degradation"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92YY6 at UniProt or InterPro

Protein Sequence (420 amino acids)

>SMa1329 Peptidase (Sinorhizobium meliloti 1021)
MDISPRQTLAAGPPFDAAKLDRLMEEAGIDVLLATSKHNTQYLLGGYKFIFFAAMDAIGH
SRYLPIVVYEKGSPDHSAYIGNRMEGGEHQNNPFWTPAVHTATWGTLDAAALAVEHLRKI
GKAGARVGIEPSFLPADARDLFASRLDGARFVDATHTLERLRSIKTPQELEKLKVASELI
TDSMLATIAAAREGSTKGEIIERLRREETNRGLHFEYCLLTLGASHNRAASPQAWAKGEV
LSIDSGGNYQGYIGDLCRMGVLGEPDAELEDLLAEVDSIQKAAFARIKAGATGSEMIASA
EEILKSSPSAAFTDFFCHGMGLISHEAPFLMTNHPVAYEGVDADRPLEVGMIISVETTML
HPRRGFIKLEDTVAVTTDGYEMFGNRGRGWNPGGVRSGEILRKTEPGARWHAGLVVCHVW