Protein Info for SMa1301 in Sinorhizobium meliloti 1021

Annotation: Permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 408 transmembrane" amino acids 16 to 37 (22 residues), see Phobius details amino acids 57 to 75 (19 residues), see Phobius details amino acids 86 to 104 (19 residues), see Phobius details amino acids 110 to 132 (23 residues), see Phobius details amino acids 143 to 166 (24 residues), see Phobius details amino acids 173 to 192 (20 residues), see Phobius details amino acids 227 to 246 (20 residues), see Phobius details amino acids 257 to 275 (19 residues), see Phobius details amino acids 286 to 305 (20 residues), see Phobius details amino acids 311 to 332 (22 residues), see Phobius details amino acids 352 to 371 (20 residues), see Phobius details amino acids 377 to 397 (21 residues), see Phobius details PF07690: MFS_1" amino acids 29 to 328 (300 residues), 94.3 bits, see alignment E=3.7e-31 amino acids 260 to 400 (141 residues), 34.3 bits, see alignment E=6.5e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMa1301)

Predicted SEED Role

"transporter, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92Z04 at UniProt or InterPro

Protein Sequence (408 amino acids)

>SMa1301 Permease (Sinorhizobium meliloti 1021)
MTTPASTAQTQHPTGLSAGMTFLMAAACGLIAANLYYTQPLAGPIAVDIGLPAEATGLIV
TLTQIGYGLGLLLLVPLGDLVENRRLIVTMIGVVTLALIAAGLSTTPGPFLTASLAIGVG
SVAVQMIVPFAANLAPDAARGRVVGNIMSGLMVGIMMARPISGLIAGLSSWHAVFYISAI
VMVGLGTLLWVQLPIRMPTARLSYGQLLKSMAQLLAAQPVLQRRAAYQAFQFAAFSLFWT
VTPLYLAGPRFGLGHNGIALFALAGVAGAIASPIAGRLADKGLVRPATAFGLLSVGVAFL
VTQIASEGSAIALTLLTLAAILLDFGVTMTLVTGQRSIYELGAELRSRLNGLFMAIFFTG
GAIGSALGAWAFASGGWWFASMIGFALPATAVAIFLTEKHGQERSLQH