Protein Info for SMa1160 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 193 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 53 to 72 (20 residues), see Phobius details amino acids 84 to 105 (22 residues), see Phobius details amino acids 111 to 131 (21 residues), see Phobius details amino acids 143 to 165 (23 residues), see Phobius details PF13194: DUF4010" amino acids 92 to 175 (84 residues), 69 bits, see alignment E=2.4e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMa1160)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92Z63 at UniProt or InterPro

Protein Sequence (193 amino acids)

>SMa1160 hypothetical protein (Sinorhizobium meliloti 1021)
MIAGLAVFALGGLAVAGDYRIAAAGAAALAGVLASRELMHNLLKTLSWIELRSALVLAAM
TAIGLPLLPNHAIDPWGGFNPREVWLFTLLSATISFMGYVAVRVLGSSRGLLVGGLIGAV
VSSTAVTASFGQKARSGEEPLPLAGAASIAAVVALLRVLTVTLFFSPPVFPEVCLAHDRS
SFDLCRGWCRSDD