Protein Info for SMa1155 in Sinorhizobium meliloti 1021

Annotation: cation transport P-type ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 transmembrane" amino acids 59 to 78 (20 residues), see Phobius details amino acids 83 to 99 (17 residues), see Phobius details amino acids 245 to 265 (21 residues), see Phobius details amino acids 272 to 297 (26 residues), see Phobius details amino acids 692 to 714 (23 residues), see Phobius details amino acids 724 to 741 (18 residues), see Phobius details amino acids 769 to 788 (20 residues), see Phobius details amino acids 800 to 816 (17 residues), see Phobius details amino acids 827 to 849 (23 residues), see Phobius details amino acids 865 to 884 (20 residues), see Phobius details PF00690: Cation_ATPase_N" amino acids 20 to 74 (55 residues), 56.8 bits, see alignment 4.1e-19 PF00122: E1-E2_ATPase" amino acids 114 to 304 (191 residues), 162 bits, see alignment E=3.3e-51 TIGR01494: HAD ATPase, P-type, family IC" amino acids 207 to 342 (136 residues), 80.1 bits, see alignment E=6e-27 amino acids 604 to 723 (120 residues), 105.4 bits, see alignment E=1.3e-34 PF13246: Cation_ATPase" amino acids 393 to 468 (76 residues), 43.1 bits, see alignment E=1.1e-14 PF00702: Hydrolase" amino acids 524 to 646 (123 residues), 53.6 bits, see alignment E=1.2e-17 PF08282: Hydrolase_3" amino acids 629 to 676 (48 residues), 22.3 bits, see alignment 3e-08 PF00689: Cation_ATPase_C" amino acids 716 to 887 (172 residues), 149.4 bits, see alignment E=2.8e-47

Best Hits

KEGG orthology group: K01552, [EC: 3.6.3.-] (inferred from 100% identity to sme:SMa1155)

Predicted SEED Role

"Ca ion P-type ATPase"

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.-

Use Curated BLAST to search for 3.6.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92Z67 at UniProt or InterPro

Protein Sequence (900 amino acids)

>SMa1155 cation transport P-type ATPase (Sinorhizobium meliloti 1021)
MNSATFVDTEPHVQDAAMDDDLSTGLGQKEAEVRLTQFGPNVLPEPQASSLFATFLRQFR
SPLIYILLAATLVSLALGDVRDALFIGIVLVANGTIGCMQEHSAGKAALALRKLEQPKAN
VARDGHVQEIDARLLVPGDLVLIEAGGRVPADLRLLSATDLVCDESLLTGESAPVHKSLT
AVDTTPEVNARLMAFAGTLVTRGRGRGSISATGAATEIGKIAAEIGKASVSKPPLMIRME
RFSQFIAWVVAAALVLLILVGIARSMSPSDLFMMSVGLAVSAIPEGLPIAISVALAISMR
RMAKAHVIVRRMPAVEALGSCTMIATDKTGTLTLNELTVTDIRLPDGTDIVCDTGFDLDA
CTIRGDGTPPEEARERALALLMAASLPNEGSLTRQDNGWTAVGDTVDVALLAAAYKGGLP
RDVIEDDYPLVARIPYEPDLKYAASFHRHGDSIRIFVKGAAETLIDMADRMDMDGRAEPI
DREALLRQKEEMAARGLRVLAFAEGETAVESDGGFGRHLLVDLVFLGLAGMQDPVRPEVP
QAIRDCHSAGLDVAMVTGDDPKTAAAIASQAGLIFTEDQVVTGEAVRRAEENGQESLDTL
TRHGRIYARVAPSQKLALVLSLARNGHFVAVTGDGVNDAPALKHAHIGVAMGRKGTEVAK
ESADIIITDDNFASIVSGIREGRVAYANIRKVIFMLMSTGAAELLLFLLAIPLGLPMPLL
PVQLLWLNLVTNGIQDIALAGESPEGDELSRAPRRPSEPIFDRLMIRRIWQSTLVMGAGG
FAMFYVLLEQGYGESEARNLLLLLFVLFENFQTLASRSERKSVLQLGFLANPLLLLSIAA
AQGLHIAAMYTPILSETLQVSPISFSEWALLLVAASSALLVVEIDKWRARHTARGRSRGQ