Protein Info for SMa1122 in Sinorhizobium meliloti 1021

Annotation: permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 787 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 269 to 290 (22 residues), see Phobius details amino acids 316 to 338 (23 residues), see Phobius details amino acids 359 to 381 (23 residues), see Phobius details amino acids 430 to 453 (24 residues), see Phobius details amino acids 655 to 678 (24 residues), see Phobius details amino acids 703 to 731 (29 residues), see Phobius details amino acids 751 to 770 (20 residues), see Phobius details PF02687: FtsX" amino acids 269 to 389 (121 residues), 61.7 bits, see alignment E=7.3e-21 amino acids 661 to 774 (114 residues), 65.4 bits, see alignment E=4.9e-22

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 100% identity to sme:SMa1122)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92Z85 at UniProt or InterPro

Protein Sequence (787 amino acids)

>SMa1122 permease (Sinorhizobium meliloti 1021)
MSSLDRKLIRELWRLKAQVLAIALVIASGTALLIMALTTIEALEETTAAYYERTRFADVF
AQAKRAPEHLGRDIANIPGVRLAETRIVEGAIVDMPGFAEPVVAQLLSLPERGPELLNAL
VIRSGRLTDPTRPNEVVVSEPFAEAHDLKPGDSFSAVLRGRKRTLQVVGTALSPEFVYAI
APGGLMPDDERFGVLWMGHDALAAAFDLKASFNSVTLDLLPGADEKDVIRRLDGLLAPFG
GIGAYGRADQTSNWFLESEIAQQKNMSRIMPTIFLAVAAFLNNMVIARLIETERHEIGLL
KAFGYSNLAIGWHYAKMVLTIGTIGVLIGSLLGAWLGHWNTELYTKFYRFPFLLYRPGPA
GFVIAGAISLGAALAGSLAAVRRAVRLPPAEAMFPPSPPIYRRSWASRTALAGALDEPSR
MILRRIIRWPVRAFLASLGLAMSIAVLIMALQWVDAIDALAETAFERGQHQDATIAFNDL
LPIHTAGDYEHLPGVLAAEPYRHASARISHGHLVERQGIIGVPSGAILSPVFDVERGRIE
VPPGGLVLSRKLAELLHVSAGDTVGVELLEGRQARLSLPVAQVFETYLGTPAYMDMEALN
RISGDGRVVSGLHILVDAPSRTRLLAKLKEIPNVAAVLFRQAAIDTFYKTMGETIFIFVG
FFVAFSMTLSVGVTYNSIRIALSERARELATLRVLGFSRWEISYILLGEVGILTWIAIPF
GATVGYGLAWYMTSAFETELYRVPLVLRDATYGKAALIALAATLVCAALVRRRLDRLDLI
AVLKTRE