Protein Info for SMa1076 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 194 PF13560: HTH_31" amino acids 15 to 70 (56 residues), 36.3 bits, see alignment E=1.7e-12 PF12844: HTH_19" amino acids 16 to 74 (59 residues), 30.8 bits, see alignment E=6.5e-11 PF01381: HTH_3" amino acids 19 to 72 (54 residues), 37.7 bits, see alignment E=5.2e-13 PF07883: Cupin_2" amino acids 125 to 191 (67 residues), 60.1 bits, see alignment E=4.2e-20 PF02311: AraC_binding" amino acids 134 to 183 (50 residues), 31.6 bits, see alignment E=3.7e-11 PF05899: Cupin_3" amino acids 135 to 171 (37 residues), 24.3 bits, see alignment 6.3e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMa1076)

Predicted SEED Role

"Transcriptional regulator, MerR family" in subsystem Cobalt-zinc-cadmium resistance

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92ZA9 at UniProt or InterPro

Protein Sequence (194 amino acids)

>SMa1076 hypothetical protein (Sinorhizobium meliloti 1021)
MLSDTLSTELQRYAIGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQMFPTLPTLL
RIAMVFGVGLDHFFNADKEEPLIAIVRKEQRLKLPSPPGEKHPAFLFESLDYPASDRRME
AFYAEFPVDSPPSEPHQHGSAEFIYVLSGRLIVNVNGKECALDTGDAVYFDSSVPHSYRR
EGGEISTAIVVTSS