Protein Info for SMa1005 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 266 transmembrane" amino acids 18 to 38 (21 residues), see Phobius details amino acids 59 to 85 (27 residues), see Phobius details amino acids 91 to 110 (20 residues), see Phobius details amino acids 130 to 149 (20 residues), see Phobius details amino acids 162 to 185 (24 residues), see Phobius details PF14342: DUF4396" amino acids 55 to 191 (137 residues), 134.6 bits, see alignment E=1.7e-43

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMa1005)

Predicted SEED Role

"Multicopper oxidase" in subsystem Copper homeostasis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92ZE4 at UniProt or InterPro

Protein Sequence (266 amino acids)

>SMa1005 hypothetical protein (Sinorhizobium meliloti 1021)
MWPGIQFRNNPEPSVMKWGFILVTLYLGPVGLLLYVLADKERVPGTHEEFIKPLWKQGVG
STIHCVAGDATGIIVAAVVTAVLGLPMWLDIIEYAAGFALGLFIFQALFMKNMMGGSYWE
NVRKSFMPEFISMNAMMAGMAPVLAILMMGRDMRAMWPSEMLFWGVMALGVGVGFLAAYP
FNVWLVAKGMKHGLMTDRSEHSSATPAATAMPPKLLTPQRIASGENTTPSTGNTRRRSPR
RERRSLPWRRSRRSSSLPGSRIPSPR