Protein Info for SMa0800 in Sinorhizobium meliloti 1021

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 291 transmembrane" amino acids 26 to 47 (22 residues), see Phobius details amino acids 72 to 99 (28 residues), see Phobius details amino acids 105 to 131 (27 residues), see Phobius details amino acids 159 to 181 (23 residues), see Phobius details amino acids 207 to 232 (26 residues), see Phobius details amino acids 256 to 278 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 154 to 279 (126 residues), 42.8 bits, see alignment E=2.4e-15

Best Hits

KEGG orthology group: K02054, putative spermidine/putrescine transport system permease protein (inferred from 100% identity to sme:SMa0800)

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92ZM1 at UniProt or InterPro

Protein Sequence (291 amino acids)

>SMa0800 ABC transporter permease (Sinorhizobium meliloti 1021)
MVSQTETGSGRPYSPAQVRRLTDFDLTLPALGLLILFFVLPVAMLLTRSVTEPVPGLGNY
AELLGSSTYLRIFANTFIVSSLVTLVSLLIGFPVAWALAIMPSRAASIVFAILLLSMWTN
LLARTYAWMVLLQRTGVINKMLLGMGLIDTPLPLVNNLTGVTIGMTYIMLPFIILPLYGV
IRKIDPAILQAAALCGANRWQSLVRVLLPLAMPGMAAGALMVFVMSLGYFVTPALLGGTS
NMMLAELIAQFVQSLVNWGMGGAAALVLLVVTLALYAVQLRFFGTNRIGGR