Protein Info for SMa0525 in Sinorhizobium meliloti 1021

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 601 transmembrane" amino acids 39 to 62 (24 residues), see Phobius details amino acids 90 to 116 (27 residues), see Phobius details amino acids 126 to 147 (22 residues), see Phobius details amino acids 172 to 200 (29 residues), see Phobius details amino acids 220 to 245 (26 residues), see Phobius details amino acids 279 to 297 (19 residues), see Phobius details amino acids 327 to 353 (27 residues), see Phobius details amino acids 395 to 419 (25 residues), see Phobius details amino acids 432 to 456 (25 residues), see Phobius details amino acids 463 to 484 (22 residues), see Phobius details amino acids 513 to 534 (22 residues), see Phobius details amino acids 540 to 561 (22 residues), see Phobius details amino acids 569 to 589 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 106 to 294 (189 residues), 63 bits, see alignment E=1.6e-21 amino acids 412 to 592 (181 residues), 49.2 bits, see alignment E=2.8e-17

Best Hits

KEGG orthology group: K02011, iron(III) transport system permease protein (inferred from 100% identity to sme:SMa0525)

Predicted SEED Role

"Ferric iron ABC transporter, permease protein" in subsystem Campylobacter Iron Metabolism or Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q930C1 at UniProt or InterPro

Protein Sequence (601 amino acids)

>SMa0525 ABC transporter permease (Sinorhizobium meliloti 1021)
MIRVPPSPSGRGASALSDILMSTQSRNRSFKDAFLSPGLGLKAAVLVLLTALVAAPLLKV
FGATLAPGAWSAWSDVLASNLSRNLFWLPLANTMILGAGVATGCVLVGGFLAWLVVMTDV
PFRRTIGLLATLPFMIPSFATALAWGSLFRNARVGGQIGFLEGLGFSVPDWLAWGMVPTL
VVLMAHYYSLAFTVIAAALATVNSDLVEAAQMTGAGRRRIFLGIVLPVALPALVAGASLT
FAGAVSNFAAPALLGLPVRMQTLATRLYGMIEIGQAERGYVLAILLILVSAFFLWAGNRV
ISGRRSYATITGKGGRSKRFALGTARLPLFVAAASICVLTTVVPVVILIASSLAPSSSAL
FSDWSLHYWIGASDPAIARGQAGIWNNPLILSATGVTVGLGVTVAFSASLVGLLVAFVLA
RSRSGFLSAAINQISFLPLLVPGIAFGAAYVALLGAPIGPLPALYGTFLLLVIAATAYLV
PFAVQTGRAVIQQVSGDLDESARMTGAGFLRRLFAITVPLAIRGLSAGALIVFVKIVRDL
SLVVLLFTPTMPLLSVLAYRYASDGFTQFANALTVVVLVISVAATLFANRLQAKSQPWLQ
S