Protein Info for SMa0364 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 594 transmembrane" amino acids 34 to 55 (22 residues), see Phobius details PF02563: Poly_export" amino acids 65 to 132 (68 residues), 33 bits, see alignment E=2.7e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMa0364)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q930J9 at UniProt or InterPro

Protein Sequence (594 amino acids)

>SMa0364 hypothetical protein (Sinorhizobium meliloti 1021)
MDHATKSEATRGSSALPYSDGRSTAAPFHRVRHGLFTAAFSIIPFSFIVLFAASAGGQSA
AVNGLAPQDAVEIHLPGWHTLFGDAAKAALPNGTFTIGSAGALELPGIGRVPAAGLHASE
LAKLIADRLQARSGSHDSPVTIVEPRRPALEGQRVSPPAKQPAMVEREAMQALGGERSSV
EALLRDLAAARKEAEAAREEERAAHQAARDASILHRRHLAAERQRAAKLTQELTAARVDL
ETMKTQLKQETNAAHDWKAAVAMIKAAREAAARERSERAALEEELRAARREIEAARNGAQ
MVASEREEPLRHDMVPATGALDTMGVAADGAGAQARKAADTMAERESALEQQRQRAEGLA
RDLTVLRRDMDSLQAKVAGAIRSKAAALRARRAGEAALVDAKRALVEERQKIGVYARDLA
LALQSAAALESRAKLAAAEQAAAAQARKIAEAAAKRAGEALALELEAGKSLARELDTARR
ERDAAKEELTQVLAQHTSLKGERAWANGRELSAARQQHDGKKARTERRVEDVDEPKTRAG
NHASERAKTARATGTRSVRELGARKGRTLETRKPLKIALPNALLPKRWLAPGLW