Protein Info for SMa0198 in Sinorhizobium meliloti 1021

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 315 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 36 to 58 (23 residues), see Phobius details amino acids 67 to 84 (18 residues), see Phobius details amino acids 90 to 110 (21 residues), see Phobius details amino acids 117 to 136 (20 residues), see Phobius details amino acids 156 to 175 (20 residues), see Phobius details amino acids 206 to 227 (22 residues), see Phobius details amino acids 234 to 253 (20 residues), see Phobius details amino acids 261 to 280 (20 residues), see Phobius details amino acids 287 to 305 (19 residues), see Phobius details PF02653: BPD_transp_2" amino acids 42 to 299 (258 residues), 72.3 bits, see alignment E=1.9e-24

Best Hits

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 100% identity to smk:Sinme_5389)

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q930U0 at UniProt or InterPro

Protein Sequence (315 amino acids)

>SMa0198 ABC transporter permease (Sinorhizobium meliloti 1021)
MTFRLSSDAIRLVIPALSLSLLLAAVFWLQPRAMSYIGLNLLFNLAVPIALATIAQMLVM
AVNDLDLSMGAFVSFVACVTATFLRDAPAIGILILAGAVAAYAAIGVVIHLRNLPSIVVT
LGMSFVWGGLAVLLLPAPGGQAPDWVRWLMTVKPPLAPMAIVASIIIAVIAHFIVKRSSL
GVLIRGVGGNQRSVERAGWSIVAARATAYALAGLFAVLAGIALVGLTTSADANIALRYTL
LSIAGVILGGGEFTGGRVSPIGAVIGALTLTLASSFLSFLRISPDWQIGAQGAILIIVLA
LRLMLNRLERREKRR