Protein Info for SMa0110 in Sinorhizobium meliloti 1021

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 320 PF00005: ABC_tran" amino acids 34 to 184 (151 residues), 113.1 bits, see alignment E=1.6e-36 PF08352: oligo_HPY" amino acids 236 to 268 (33 residues), 31.6 bits, see alignment 1.8e-11

Best Hits

KEGG orthology group: K02032, peptide/nickel transport system ATP-binding protein (inferred from 100% identity to smk:Sinme_5448)

Predicted SEED Role

"Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q930Y9 at UniProt or InterPro

Protein Sequence (320 amino acids)

>SMa0110 ABC transporter ATP-binding protein (Sinorhizobium meliloti 1021)
MTDPLLEVDDLHVRFSVSGGGLLGTGRRMLHAVNGIGFSLSKGECLSIVGESGCGKSTTA
LSVLGLQEPTEGTIRYRGQPLTGPGAPGRMQRAKAVQMVFQDPYASLNPRQSVRTSLAAP
LRLHGITAASEIADRIEVMLANVGLTPEQANRYPHEFSGGQRQRIGIARALILEPEIVVL
DEPVSALDVSIRAQIINLLLDLQEKLGLGYLMISHDLSVVEHMSDRVLVMFFGQVVEEGG
WRDIFERPAHPYTRRLIAAIPDPDAALNPGTKDHFADVPLPDGRSFAVDGSTAPDVFSAP
PPSELVEIAPGHRMRLVPAV