Protein Info for SMa0108 in Sinorhizobium meliloti 1021

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 PF00005: ABC_tran" amino acids 26 to 185 (160 residues), 108.9 bits, see alignment E=3.2e-35 PF13304: AAA_21" amino acids 130 to 220 (91 residues), 30.1 bits, see alignment E=4.8e-11

Best Hits

KEGG orthology group: K02031, peptide/nickel transport system ATP-binding protein (inferred from 100% identity to smk:Sinme_5449)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q930Z0 at UniProt or InterPro

Protein Sequence (304 amino acids)

>SMa0108 ABC transporter ATP-binding protein (Sinorhizobium meliloti 1021)
MTEPLLDIRDLHLGIAVGRSVNRPLLKGVSFQIMPGEAYGLVGESGSGKSVTSLAVMGLL
KKPLAVSGGEILFKGQNLLELPKREMRRLRGNRIAMIFQEPMTALNPLSTIGRQIAEMFV
LHQGKSWDEAQKLAIEALASVRVPNPDRRARNYPHQMSGGLRQRVMIAMALACNPDLLIA
DEPTTALDVTVQAEVLRLIKELCAERGTAVLFISHDLGVIASICQRVGVMYAGCLVEENE
TRALFAAPRHEYTRGLLGALPRFGSRSLHGRQRLVDIDSIIADRSKLIETRFIAPRGAEE
GGQP