Protein Info for SMa0070 in Sinorhizobium meliloti 1021

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 327 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 45 to 64 (20 residues), see Phobius details amino acids 69 to 87 (19 residues), see Phobius details amino acids 92 to 114 (23 residues), see Phobius details amino acids 122 to 146 (25 residues), see Phobius details amino acids 169 to 192 (24 residues), see Phobius details amino acids 213 to 234 (22 residues), see Phobius details amino acids 251 to 279 (29 residues), see Phobius details amino acids 295 to 314 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 45 to 307 (263 residues), 135.4 bits, see alignment E=1.1e-43

Best Hits

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 99% identity to smk:Sinme_5469)

Predicted SEED Role

"Inositol transport system permease protein" in subsystem Inositol catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q931B0 at UniProt or InterPro

Protein Sequence (327 amino acids)

>SMa0070 ABC transporter permease (Sinorhizobium meliloti 1021)
MKRFLKIYLDKPELAGLALLFVLVLVFQAKSNGILLSFENMRGVMGLLPEMALVAIGVTL
LMICGEFDLSVGSVFALMPMSMAVLLNSGVPFTVAVLLGLMICGAIGFINGYVTLQFSIP
SFITTLGMLFIARSLTIVISGGFPPLLPPDLPTWLFTDYIWQGSPFRMSFLWFVVIAALV
AALLSLTNFGNWIRATGGFNEAAASMGIPVKRVKIVCFMLCSVLAGFAGLLQVLRLGSPL
PSIGEGLELQAVAAAVIGGTALAGGIGTVFGAIIGTLLIRTIDNGLVLSRVDANWFKFAI
GVLTMFAVIANAWMGKMSRKIKVEAHK