Protein Info for SM_b21575 in Sinorhizobium meliloti 1021

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 transmembrane" amino acids 7 to 27 (21 residues), see Phobius details amino acids 46 to 64 (19 residues), see Phobius details amino acids 72 to 93 (22 residues), see Phobius details amino acids 99 to 123 (25 residues), see Phobius details amino acids 135 to 153 (19 residues), see Phobius details amino acids 165 to 184 (20 residues), see Phobius details amino acids 216 to 234 (19 residues), see Phobius details amino acids 240 to 261 (22 residues), see Phobius details amino acids 275 to 296 (22 residues), see Phobius details amino acids 302 to 322 (21 residues), see Phobius details amino acids 328 to 332 (5 residues), see Phobius details amino acids 339 to 360 (22 residues), see Phobius details amino acids 369 to 391 (23 residues), see Phobius details PF07690: MFS_1" amino acids 18 to 355 (338 residues), 70.1 bits, see alignment E=8.5e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SM_b21575)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92US5 at UniProt or InterPro

Protein Sequence (401 amino acids)

>SM_b21575 transporter (Sinorhizobium meliloti 1021)
MKAGIPAGIVAALGLTQIIGYGTLYYSFSILAPAMAHDLGLTIEQVFGVFSASLLVAGLS
APLVGGWMDRFGAATIMTFGSAVSALALLLCAWSPSTAVFAIAIVLLEVASSMVQYQAAF
AALVEIRPKAASRSITYLTLIGGFASTIFWPIAASLGEFLSWREIYIAYALLNLLVCLPL
HRWIMRSRTPAAIESSGLNREAIAGALPVQARRRGMLLVSLAFALQGFTLSAILTHMVPM
LGAIGFGAAAVMIGSLFGPSQVLSRLINMTFGANLLPPMLATLSATLIVASVVVLGLSGT
WLPGAVVFAICLGLGSGINSIAQGSLPLWLFGSVGYGAITGRMAAARLAAGAMAPFVFSV
LMERFGTDVALLANACLGAVGMGAFLAVASAAKRRPDALTL