Protein Info for SM_b21038 in Sinorhizobium meliloti 1021

Annotation: oligopeptidemurein peptide ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 325 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 103 to 122 (20 residues), see Phobius details amino acids 142 to 164 (23 residues), see Phobius details amino acids 187 to 207 (21 residues), see Phobius details amino acids 245 to 271 (27 residues), see Phobius details amino acids 291 to 317 (27 residues), see Phobius details PF19300: BPD_transp_1_N" amino acids 3 to 103 (101 residues), 29.7 bits, see alignment E=6.5e-11 PF00528: BPD_transp_1" amino acids 115 to 322 (208 residues), 125.5 bits, see alignment E=2.1e-40

Best Hits

KEGG orthology group: K02033, peptide/nickel transport system permease protein (inferred from 100% identity to sme:SM_b21038)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92VT9 at UniProt or InterPro

Protein Sequence (325 amino acids)

>SM_b21038 oligopeptidemurein peptide ABC transporter permease (Sinorhizobium meliloti 1021)
MGMISVALGRLGQAFLLLIAMSLIGFIGIHSVGNPVFNVVNIETATPEDIHAATIALGLD
QPIWRQYLAFIGNVVSGNFGTSYIYHLPAFELVMSKLPATLELASIAMLIAAPLGTGLGL
LAGRRSGTLFDRTMVKASVSALSIPSFWLAMMLILVGAILTGWFPSGGRGLTASFLGQEW
SFLTANGLWHLVLPALALAIPNIALIARLSRSGTIEVENLDYTRFCRAKGLSARRILFRH
TLPNISVPIVTIIGLQFGGMLAFAVVVETIFSWPGVGKLLIDSIQLLDRPVVMATLTVIA
VAFVALNALVDLFYAVLDPRVRLSS