Protein Info for SM_b20818 in Sinorhizobium meliloti 1021

Annotation: hydrocarbon oxygenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 363 transmembrane" amino acids 56 to 87 (32 residues), see Phobius details amino acids 208 to 234 (27 residues), see Phobius details PF00487: FA_desaturase" amino acids 75 to 317 (243 residues), 128.4 bits, see alignment E=2.2e-41

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SM_b20818)

Predicted SEED Role

"probable hydrocarbon oxygenase MocD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92VY9 at UniProt or InterPro

Protein Sequence (363 amino acids)

>SM_b20818 hydrocarbon oxygenase (Sinorhizobium meliloti 1021)
MTTLATKRDYSLLGRDAEAAVASGLAAAEWYHTDIPRKQMKELMKREDGPAIRDTTIWLG
SMVLLGGLGIYFWGSWWAAPFFLAYGVLYGSASDSRWHECGHGTAFKTMWMNDAVYQIAC
FMIMRNPVTWRWSHTRHHTDTVIVGRDPEIAVMRPPDLIRLVLNFFGIIDVWHATIDMAR
NAFGVISAAEKTFIPEMEQPKAIRVARIWLAIYLGTIGLSLYLGSILPLVLIGLPRLYGA
WHHVLTGLLQHGGLADNVTDHRLNSRTVYMNPVSRFVYWNMNYHVEHHMFPMVPYHALPR
LHAMIKHDLPAANPSILHGYREMIPAFLRQLRNEDFFLKRELPPTAKPYREEFHIDRLVP
AAE