Protein Info for SM_b20705 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 303 transmembrane" amino acids 16 to 34 (19 residues), see Phobius details amino acids 45 to 68 (24 residues), see Phobius details amino acids 84 to 104 (21 residues), see Phobius details amino acids 110 to 128 (19 residues), see Phobius details amino acids 134 to 151 (18 residues), see Phobius details amino acids 157 to 177 (21 residues), see Phobius details amino acids 189 to 206 (18 residues), see Phobius details amino acids 218 to 235 (18 residues), see Phobius details amino acids 247 to 266 (20 residues), see Phobius details amino acids 272 to 290 (19 residues), see Phobius details PF00892: EamA" amino acids 19 to 150 (132 residues), 58.7 bits, see alignment E=3.9e-20 amino acids 164 to 289 (126 residues), 45 bits, see alignment E=6.7e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to smk:Sinme_4324)

Predicted SEED Role

"FIG028883: Permeases of the drug/metabolite transporter (DMT) superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92TT4 at UniProt or InterPro

Protein Sequence (303 amino acids)

>SM_b20705 hypothetical protein (Sinorhizobium meliloti 1021)
MAVDSVPGNLSRENGAARAGVVVMLLGMLMFSVNDVMGKWLVATYSVGQVVLIRSIAAAL
LLAPFLWVSGPKKLFTLERPGLQLARVVASTAEVVAFYFAVVYLPLADVMTYWLAAPIYV
AAVSPLVLKEPVGWRRWTAIGIGFVGVVVALEPSSQAFTLPAVISILGSMTFAFMMISGR
SLRGTPDTTLAFWQIVGAAVAGLVWAPFDWTPLKPLDTALICLLGAVAMIAHVLVNRALK
LADAATVAPLQYTLLFWAIFFGWLIFGDTPRLSMVIGAALIVASGLFIFFREQQLKRQGR
LKG