Protein Info for SM_b20619 in Sinorhizobium meliloti 1021

Annotation: regulatory protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 329 transmembrane" amino acids 301 to 317 (17 residues), see Phobius details PF04198: Sugar-bind" amino acids 77 to 322 (246 residues), 166.9 bits, see alignment E=2.6e-53

Best Hits

KEGG orthology group: None (inferred from 100% identity to smk:Sinme_4211)

Predicted SEED Role

"Cys-tRNA(Pro) deacylase YbaK"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92TI6 at UniProt or InterPro

Protein Sequence (329 amino acids)

>SM_b20619 regulatory protein (Sinorhizobium meliloti 1021)
MNYVRVSVRKNSMPIRANDQIIHKAAWLYYTHGLRQDEVAQRLEISRASIAMYLRKAREM
GIVTITTSTELFSDDVLARELEDAAGLTSVWIVPEDRQAIDPAVEMPVVAASVFLELINK
GDRIGVAWGRTVYHIADVMPFADLRGVSVVQLCGNLGAPYSYRPDQCTTEIARRLNAEGI
NFYAPLVLSSERLAEELRREPVIREQLATISDCKLALYSVGGIEEDSHLVKCGALSAKDL
HAMGKRGAAGVIAGQLIDLDGQWMDCAHNRRCISADLDSIRAIRKRMLVVQEESKFEPLM
AALKGGFASHLVVTASMARRIMDRWSRDH