Protein Info for SM_b20319 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 405 PF03486: HI0933_like" amino acids 5 to 394 (390 residues), 337.5 bits, see alignment E=3e-104 TIGR00275: flavoprotein, HI0933 family" amino acids 6 to 394 (389 residues), 275.4 bits, see alignment E=7.3e-86 PF13450: NAD_binding_8" amino acids 8 to 35 (28 residues), 24.2 bits, see alignment (E = 9.8e-09) TIGR03862: flavoprotein, TIGR03862 family" amino acids 28 to 400 (373 residues), 516.4 bits, see alignment E=4e-159

Best Hits

KEGG orthology group: K07007, (no description) (inferred from 100% identity to sme:SM_b20319)

Predicted SEED Role

"NAD(FAD)-utilizing dehydrogenases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92WM7 at UniProt or InterPro

Protein Sequence (405 amino acids)

>SM_b20319 hypothetical protein (Sinorhizobium meliloti 1021)
MERKEIAIIGGGPAGLMAAEVLSRSDHAVTVYEAMPTAARKFLLAGKSGLNITHSEDYRD
FATRFGDASARLRPGLDAFTPRDVRVWAAGLDAETFVGSSGRVFPKAMKASPLLRAWLRR
LEAQGVRLLTRHRWSGFAENGYIFDTPEGKTVVRCDAALLALGGASWPRLGSDAAWMPLL
RARGVPISDFRPANCGFDVAWSEIFRERFAGQPLKGVTATSDAGTVSGEFVVTRHGIEGS
LVYAHAASLRDRLDRDGTAALLLDLTPGRTAGRLARDLARQDRKASFSNRLRKGAGLDPV
KAALLRELSPEAARAAAEQLAAEIKALPLPVLATRPIAEAISSAGGIRLDAIDDRYMLKA
LPGLFAAGEMLDWEAPTGGYLLTACLAMGRAAARGVEAWLADSLR