Protein Info for SM_b20063 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 98 PF05016: ParE_toxin" amino acids 8 to 91 (84 residues), 67.7 bits, see alignment E=5.4e-23

Best Hits

Swiss-Prot: 42% identical to PARE1_MYCTU: Toxin ParE1 (parE1) from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)

KEGG orthology group: None (inferred from 98% identity to smk:Sinme_4105)

Predicted SEED Role

"Death on curing protein, Doc toxin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92X99 at UniProt or InterPro

Protein Sequence (98 amino acids)

>SM_b20063 hypothetical protein (Sinorhizobium meliloti 1021)
MATERPFRLAPTAKADLRKIWRYTARRWSLEQAETYQDQLYTAFEGLAVGTKKGRNVDVR
PGYLKYPAGAHIVYFRDRGDRIDIIRILHGRVDAQRHL