Protein Info for SGL_RS14065 in Synechocystis sp000284455 PCC 6803

Annotation: AAA family ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 499 PF00004: AAA" amino acids 262 to 390 (129 residues), 109.6 bits, see alignment E=1.6e-35 PF17862: AAA_lid_3" amino acids 415 to 455 (41 residues), 29.9 bits, see alignment 3.2e-11

Best Hits

Swiss-Prot: 56% identical to YCF46_GUITH: Uncharacterized AAA domain-containing protein ycf46 (ycf46) from Guillardia theta

KEGG orthology group: None (inferred from 100% identity to syn:slr0480)

Predicted SEED Role

"ATPase of the AAA+ family protein associated with FIG137771 hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (499 amino acids)

>SGL_RS14065 AAA family ATPase (Synechocystis sp000284455 PCC 6803)
MTFSEEFELLLRACYPLLYIPTQEEERLEMAIASSAQRLGNRSVYYWDFVEGYQGNPNGA
NVGRRNPLQALEFIEKLPASSNGIFVLRDFNRFLDDVSISRKLRNLARRLKAEAKNLVIV
APQIYIPNELAEIITVMDFPLPSSAEIQGEIERLLTGLGQKVESSLRDEWSRAAQGLSME
RIRRVLARCLADHGQLGADDVELMLEEKRQSIRQTQILDFYPASERISDIGGLDNLKDWL
LRRGGAFSEQARRYGLPYPRGLLLAGIQGTGKSLTAKAIAHHWHLPLLRLDVGRLFGGLV
GESEARTRQMINLAEALAPCVFWIDEIDKAFGSMDSHGDGGTTSRVFGAFITWLAEKTSP
VFVVATANNVQSLPPELLRKGRFDEIFFVGLPNKTEREAIFSVHLNRLRPHKMADYDIHR
LAYETPDFSGAEIEQILVEAMHIGFSQNREFTTDDILSAASQVVPLARTAKEQIQFLQEW
AAAGKARLASRDSGFPAIS