Protein Info for Rv3239c in Mycobacterium tuberculosis H37Rv

Annotation: Probable conserved transmembrane transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1048 transmembrane" amino acids 24 to 47 (24 residues), see Phobius details amino acids 61 to 81 (21 residues), see Phobius details amino acids 92 to 111 (20 residues), see Phobius details amino acids 117 to 139 (23 residues), see Phobius details amino acids 151 to 171 (21 residues), see Phobius details amino acids 178 to 195 (18 residues), see Phobius details amino acids 216 to 232 (17 residues), see Phobius details amino acids 238 to 259 (22 residues), see Phobius details amino acids 280 to 304 (25 residues), see Phobius details amino acids 315 to 335 (21 residues), see Phobius details amino acids 345 to 362 (18 residues), see Phobius details amino acids 380 to 399 (20 residues), see Phobius details amino acids 413 to 434 (22 residues), see Phobius details amino acids 448 to 467 (20 residues), see Phobius details TIGR00711: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family" amino acids 27 to 434 (408 residues), 237.7 bits, see alignment E=1.2e-74 PF07690: MFS_1" amino acids 31 to 200 (170 residues), 121.9 bits, see alignment E=5.8e-39 amino acids 285 to 474 (190 residues), 41.9 bits, see alignment E=1.3e-14 PF05977: MFS_3" amino acids 76 to 200 (125 residues), 29.5 bits, see alignment E=5.4e-11 PF00027: cNMP_binding" amino acids 534 to 613 (80 residues), 74.2 bits, see alignment 1.3e-24 PF01734: Patatin" amino acids 790 to 947 (158 residues), 97.3 bits, see alignment E=2.7e-31

Best Hits

KEGG orthology group: None (inferred from 100% identity to mtf:TBFG_13268)

Predicted SEED Role

"Multidrug resistance protein B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1048 amino acids)

>Rv3239c Probable conserved transmembrane transport protein (Mycobacterium tuberculosis H37Rv)
MHISLHGGKGFANLTRRRRPSSASVLLVAGFGAFLAFLDSTIVNIAFPDIQRSFPSYDIG
SLSWILNGYNIVFAAFMVAAGRLADLLGRRRTFLSGVLVFTIASGLCAVAGSVEQLVAFR
VLQGIGAAILVPASLALVVEGFDAARRAHAIGLWGAAAAIAAGLGPPIGGLLVEWAGWRW
VLLVNVPLGIVAAIATKRMLVESRASGRRRMPDLRGALLLAVTLGLVTLGLVKGPDWGWL
SVATVGSFLASVLTSVGFVHSSRSHPAPLVEPALLRSRSFVAGNLLTLVAAAGFYCYGLT
HVLYLNYVWHYSLLKAGFAIAPAAVVAAVVAAALGRVAGRHGHRVIVLVGALVWAGSLVW
YLQRVGSEPDFLRVWLPGQLLQGIGVGATLPVLSSAALAEVAKGGSYATSSAVVSTTRQL
GAVLGVAVMVILIGKPEHGTAEEALRRGWAMAAICFIAVAVAAAVLGRTNRNPVQMPAPE
PAIAPRLEPPIPQPAAAPIEHWAAGDADPLGNLPLFAGLDAATLAQLGEHVEDVELEAGC
YLFHEGDPSDSLYVIRTGRVQVLQDSIVLKELGRGEVLGELGLLIDAPRSATVRALRDTK
LVRLTKAQFDEIADHGALAALVKVLATRLREAPPPATDSTSPEVVVSVIGVSGDAPVPAV
AAGLLTALSARLRAVDPGRVDRDGLDRAERVADKVVLHAAVEDAGWRDFCLRVADRIVLV
AGDPNPQAARLPARARGADLVLAGPAASREHRRQWEELITPRSVHVVHYRRILENVRPLA
ARIAGRSIGLVLGGGGARGFAHLGVLDELERVGVTIDRFAGTSMGAVIAVFGACGMDAAT
ADAYAYEYFIRHNPLSDYAFPVRGLVRGRRTLTLLEAAFGDRLVEELPKEFRCVSVDLLA
RRPVVHRRGRLVDVIGCSLRLPGIYPPQVYNGRLHVDGGVLDNLPVSTRASPDGPLIAVS
IGLGGGGPGSARQDGSPKVPGIGDTLMRTMTIGSQRGADAALSLAQVVIRPDTGAVGLLE
FHQIDAAREAGRVAAREAMPHIMALLNR